WebOct 28, 2024 · Using real data from the 1000 Genomes project, we show that LocalNgsRelate provides more accurate IBD inference for low-depth NGS data than two state-of-the-art genotype-based methods, Albrechtsen et al. and hap-IBD. We also show that the method works well for NGS data down to a depth of 2×. WebMar 13, 2024 · 2.1.2 Computing IBD coverage and masked regions. In certain situations, we may want to output the masked regions (--outmask flag) and the IBD coverage across the genome (--outcoverage flag).The output masked regions will be written to the gzip-compressed file "example-2.mask.gz", and the output IBD coverage will be written to the …
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